Nobel Prize in chemistry honors 3 scientists who used AI to design proteins — life’s building blocks

Nobel Prize in chemistry honors 3 scientists who used AI to design proteins — life’s building blocks
Combination image showing this year's winners of the Nobel Prize in chemistry: University of Washington computational biologist professor David Baker (left) at his lab in Seattle, Washington, and Demis Hassabis and John M. Jumper at the offices of Google DeepMind UK in London, Britain, on October 9, 2024. (REUTERS/AFP photos)
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Updated 10 October 2024
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Nobel Prize in chemistry honors 3 scientists who used AI to design proteins — life’s building blocks

Nobel Prize in chemistry honors 3 scientists who used AI to design proteins — life’s building blocks
  • David Baker created a computer program called Rosetta that helped analyze information about existing proteins in comprehensive databases to build new proteins that don’t exist in nature
  • Demis Hassabis and John Jumper created an artificial intelligence model that has predicted the structure of virtually all the 200 million proteins that researchers have ever identified

LONDON: Three scientists who discovered powerful techniques to decode and even design novel proteins — the building blocks of life — were awarded the Nobel Prize in chemistry Wednesday. Their work used advanced technologies, including artificial intelligence, and holds the potential to transform how new drugs and other materials are made.
The prize was awarded to David Baker, a biochemist at the University of Washington in Seattle, and to Demis Hassabis and John Jumper, computer scientists at Google DeepMind, a British-American artificial intelligence research laboratory based in London.
Heiner Linke, chair of the Nobel Committee for Chemistry, said the award honored research that unraveled “a grand challenge in chemistry, and in particular in biochemistry, for decades.”
“It’s that breakthrough that gets awarded today,” he said.
What is the 2024 Nobel Prize in Chemistry for?
Proteins are complex molecules with thousands of atoms that twist, turn, loop and spiral in a countless array of shapes that determine their biological function. For decades, scientists have dreamed of being able to efficiently design and build new proteins.
Baker, 62, whose work has received funding from the National Institutes of Health since the 1990s, created a computer program called Rosetta that helped analyze information about existing proteins in comprehensive databases to build new proteins that don’t exist in nature.
“It seems that you can almost construct any type of protein now with this technology,” said Johan Åqvist of the Nobel committee.
Hassabis, 48, and Jumper, 39, created an artificial intelligence model that has predicted the structure of virtually all the 200 million proteins that researchers have ever identified.
The duo “managed to crack the code. With skillful use of artificial intelligence, they made it possible to predict the complex structure of essentially any known protein in nature,” Linke said.

Why does this work matter?
The ability to custom design new proteins — and better understand existing proteins — could enable researchers to create new kinds of medicines and vaccines.
It could also allow scientists to design new enzymes to break down plastics or other waste materials that would neutralize pollution, Baker told a news conference, or even come up with entirely new material for semi conductors.
“I think there’s fantastic prospects for making better medicines — medicines that are smarter, that only work in the right time and place in the body,” Baker told The Associated Press.
One example is a potential nasal spray that could slow or stop the rapid spread of specific viruses, such as COVID-19, he said. Another is a medicine to disrupt the cascade of symptoms known as cytokine storm.
“That was always the holy grail. If you could figure out how protein sequences folded into their particular structures, then it might be possible to design protein sequences to fold into previously never seen structures that might be useful for us,” said Jon Lorsch, a director at the NIH.
How did the winners react?
Baker told the AP he found out he won the Nobel during the early hours of the morning alongside his wife, who immediately started screaming.
“So it was a little deafening, too,” he said.




Computational biologist professor David Baker speaks to coworkers at the University of Washington in Seattle after receiving the 2024 Nobel Prize in chemistry on October 09, 2024. (Getty Images/AFP)

Hassabis said he was just having a “normal morning” at home when he eventually got the call.
The Nobel committee didn’t initially have his number and first managed to get hold of his wife, but she hung up on them a few times, he told an online news briefing.
“They kept persisting and then I think she realized it was a Swedish number and then they asked for my number,” he said.
“It’s so incredible. It’s so unreal at this moment,” said Jumper, a researcher and director at Google DeepMind. “And it’s wonderful.”
What was the role of AI?
One of Britain’s leading tech figures, Hassabis co-founded the AI research lab DeepMind in 2010, which was acquired by Google in 2014. Among its past breakthroughs was developing an AI system that mastered the Chinese game Go and defeated the game’s human world champion.
In the past researchers labored for months or years to decode the structure of a single complex protein.
But the AI model created by the DeepMind researchers, called AlphaFold, “can determine the structure of a protein pretty accurately within a few seconds or minutes,” Hassabis told the AP in an interview, adding that this saves researchers “years of potentially painstaking experimental work.”
The two research groups learned from each other’s work.




Johan Aqvist, member of the Nobel Committee for Chemistry, Hans Ellegren, permanent secretary and Heiner Linke, committee chairman award this year's Nobel Prize in Chemistry to David Baker, Demis Hassabis, and John Jumper at the Royal Swedish Academy of Sciences, in Stockholm, Sweden, on Oct. 9, 2024. (TT News Agency via AP)

Baker said Hassabis and Jumper’s artificial intelligence work gave his team a huge boost.
“The breakthroughs made by Demis and John on protein structure prediction really highlighted to us the power that AI could have,” said Baker. “And that led us to apply these AI methods to protein design.”
Science has sped up, said Jumper. “It is a key demonstration that AI will make science faster “
It’s the second Nobel prize this year awarded to someone with links to artificial intelligence research at Google.
Nobel physics prize winner Geoffrey Hinton, 76, often called the “godfather of AI,” also worked at the California-based tech company until quitting so he could speak more openly about the potential downsides of AI.
“I’m hoping AI will lead to tremendous benefits,” Hinton told a news conference Tuesday. “I’m convinced that it will do that in health care.”
“My worry is that it may also lead to bad things. And in particular, when we get things more intelligent than ourselves, no one really knows whether we’re going to be able to control them.”
More about the Nobels
Wednesday’s chemistry prize winners represent a younger generation taking forward the work of the AI pioneers honored for physics, said Michael Kearns, a computer scientist at the University of Pennsylvania.
They are making AI models “scalable and practical and applying it to very important scientific problems.”
Baker gets half of the 11 million Swedish Kronor ($1 million) prize money, while Hassabis and Jumper share the other half.
The Nobel announcements opened Monday with medical researchers Victor Ambros and Gary Ruvkun winning the medicine prize. Hinton and fellow AI pioneer John Hopfield, 91, won the physics prize.
The awards continue with the literature prize Thursday, the Nobel Peace Prize Friday and the economics award on Oct. 14.
The prize money comes from a bequest by the award’s creator, Swedish inventor Alfred Nobel. The laureates are invited to receive their awards at ceremonies on Dec. 10, the anniversary of Nobel’s death.


Philippines cleans up after sixth major storm in weeks

Philippines cleans up after sixth major storm in weeks
Updated 6 sec ago
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Philippines cleans up after sixth major storm in weeks

Philippines cleans up after sixth major storm in weeks
  • There have been no other reports so far of deaths or injuries
  • Power outages across the island province of Catanduanes could last for months
Manila: Filipinos cleared fallen trees and repaired damaged houses on Monday after the sixth major storm to batter the Philippines in a month smashed flimsy buildings, knocked out power and claimed at least one life.
The national weather service had warned of a “potentially catastrophic” impact from Man-yi, which was a super typhoon when it hit over the weekend, but President Ferdinand Marcos said Monday it “wasn’t as bad as we feared.”
Packing maximum sustained wind speeds of 185 kilometers an hour, Man-yi slammed into Catanduanes island late Saturday, and the main island of Luzon on Sunday afternoon.
It uprooted trees, brought down power lines, crushed wooden houses and triggered landslides, but did not cause serious flooding.
“Though Pepito was strong, the impact wasn’t as bad as we feared,” Marcos said, according to an official transcript of his remarks to media, using the local name for Man-yi.
One person was killed in Camarines Norte province, which Marcos said was “one casualty too many.” Police said the victim, a 79-year-old man, died after his motorbike was caught in a power line.
There have been no other reports so far of deaths or injuries.
“We will now carry on with the rescue of those (in) isolated areas and the continuing relief for those who are, who have been displaced and have no means to prepare their own meals and have no water supplies,” Marcos said.
Power outages across the island province of Catanduanes could last for months after Man-yi toppled electricity poles, provincial information officer Camille Gianan told AFP.
“Catanduanes has been heavily damaged by that typhoon — we need food packs, hygiene kits and construction materials,” Gianan said.
“Most houses with light materials were flattened while some houses made of concrete had their roofs, doors and windows destroyed.”
In the coastal town of Baler in Aurora province, clean-up operations were underway to remove felled trees and debris blocking roads and waterways.
“Most of the houses here are made of light materials so even now, before the inspection, we are expecting heavy damage on many houses in town,” disaster officer Neil Rojo told AFP.
“We’ve also received reports of roofs that went flying with the wind last night... it was the fierce wind that got us scared, not exactly the heavy rains.”
Storm weakens
Man-yi weakened significantly as it traversed the mountains of Luzon and was downgraded to a severe tropical storm as it swept over the South China Sea toward Vietnam on Monday.
More than a million people in the Philippines fled their homes ahead of the storm, which followed an unusual streak of violent weather.
Climate change is increasing the intensity of storms, leading to heavier rains, flash floods and stronger gusts.
At least 163 people in the Philippines died in the past month’s storms, which left thousands homeless and wiped out crops and livestock.
About 20 big storms and typhoons hit the Southeast Asian nation or its surrounding waters each year, killing scores of people, but it is rare for multiple such weather events to take place in a small window.
Man-yi also hit the Philippines late in the typhoon season — most cyclones develop between July and October.
This month, four storms were clustered simultaneously in the Pacific basin, which the Japan Meteorological Agency told AFP was the first time such an occurrence had been observed in November since its records began in 1951.

Texas offers Trump land on US-Mexico border for potential mass deportations

Texas offers Trump land on US-Mexico border for potential mass deportations
Updated 8 min 28 sec ago
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Texas offers Trump land on US-Mexico border for potential mass deportations

Texas offers Trump land on US-Mexico border for potential mass deportations

McALLEN, Texas: Texas is offering a parcel of rural ranchland along the US-Mexico border to use as a staging area for potential mass deportations under President-elect Donald Trump.
The property, which Texas originally purchased last month, is located in rural Starr County in the Rio Grande Valley. Republican Dawn Buckingham, the Texas Land Commissioner, sent a letter Nov. 14 to Trump extending the offer.
“We do hear through back channels that they are taking a look at it and considering it. But we just want them to know we’re a good partner. We’re here. We want to be helpful,” Buckingham told The Associated Press in an interview on Wednesday.
The property has no paved roads and sits in a county with one public hospital and limited local resources. But Buckingham stressed its location.
“We feel like this is actually very well-located. The land is very flat there. It’s adjacent to major airports. It’s also adjacent to a bridge over the river,” Buckingham said. “So if it’s helpful, then I would love to partner up with the federal government. And if it’s not, then we’ll continue to look to ways to be helpful to them.”
The land offer is the latest illustration of a sharp divide between states and local governments on whether to support or resist Trump’s plans for mass deportations of migrants living in the US illegally. On Tuesday, the Los Angeles City Council voted to become a “sanctuary” jurisdiction, limiting cooperation with federal immigration authorities to carry out deportations.
Texas leaders have long backed aggressive measures on the border to curb crossings, including installing razor-wire barriers and passing a law last year that would allow law enforcement to arrest migrants who cross the border illegally.
“By offering this newly-acquired 1400-acre property to the incoming Trump Administration for the construction of a facility for the processing, detention, and coordination of what will be the largest deportation of violent criminals in our nation’s history, I stand united with President Donald Trump to ensure American families are protected,” Buckingham said in an earlier statement.
Trump has said he plans to begin his deportation efforts on the first day of his presidency. He frequently attacked illegal immigration during his campaign, linking a record spike in unauthorized border crossings to issues ranging from drug trafficking to high housing prices.
There are an estimated 11 million people in the country illegally. Questions remain about how people would be identified and where they would be detained.
The president-elect’s transition team did not say whether they would accept Texas’ offer but sent a statement.
“On day one, President Trump will marshal every lever of power to secure the border, protect their communities, and launch the largest mass deportation operation of illegal immigrant criminals in history,” Karoline Leavitt, the transition spokeswoman for Trump and Vice President-elect JD Vance, said Wednesday.
The Texas General Land Office did not disclose the amount paid for the land, but Buckingham stated the previous owner resisted the creation of a border wall.
A 1.5-mile (2.4 kilometer) stretch of border wall was built under Republican Gov. Greg Abbott in 2021 on that land. Buckingham said with the recent purchase, the state has created another easement for more border wall construction.


Haiti blasts Macron’s criticism of transition council as ‘unfriendly and inappropriate’

Haiti blasts Macron’s criticism of transition council as ‘unfriendly and inappropriate’
Updated 4 min 8 sec ago
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Haiti blasts Macron’s criticism of transition council as ‘unfriendly and inappropriate’

Haiti blasts Macron’s criticism of transition council as ‘unfriendly and inappropriate’

PORT-AU-PRINCE: Haiti’s foreign minister met with the French ambassador to the nation on Thursday over what the ministry branded as “unfriendly and inappropriate” comments from French President Emmanuel Macron as he left the G20 summit in Brazil.
Macron had on Wednesday called the decision of the Caribbean country’s transitional presidential council to oust the prime minister earlier this month amid an escalation in gang warfare as “completely dumb.”
“Honestly, it is Haitians who killed Haiti by letting in drug trafficking,” Macron was filmed saying in Brazil, before hailing ex-Prime Minister Garry Conille, who was ousted amid divisions with the council, as a great leader.
“They are completely dumb, they should never have fired him,” he said.
His remarks sparked outrage in Haiti, a former French colony. After Haiti freed itself from slavery and declared independence in 1804, it paid France a “debt” for lost property — including slaves — over more than a century that some activists say amounted to over $100 billion.
Activists are seeking French reparations for the debt, which many blame for Haiti’s economic and political turmoil.
Speaking in Chile on Thursday, Macron vowed that “France will never turn its face from a crisis... There will never be a double standard in face of tragedy, be it in Haiti, Venezuela, or at the gates of Europe.”
France has pledged 4 million euros ($4.2 million) to a UN fund financing a deeply under-resourced security mission mandated to help restore security in Haiti, as well as funding for French and Creole classes for its troops.
Haiti’s foreign ministry said that in the meeting French Ambassador Antoine Michon promised France would stay by Haiti’s side to help restore security and carry out elections. 


NATO says new Russian missile will not alter course of Ukraine war

NATO says new Russian missile will not alter course of Ukraine war
Updated 22 November 2024
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NATO says new Russian missile will not alter course of Ukraine war

NATO says new Russian missile will not alter course of Ukraine war

BRUSSELS: The experimental hypersonic intermediate-range missile Russia fired at Ukraine will not affect the course of the war nor NATO’s backing for Kyiv, a spokesperson for the US-led defense alliance said on Thursday.
“Deploying this capability will neither change the course of the conflict nor deter NATO Allies from supporting Ukraine,” said spokesperson Farah Dakhlallah, calling the launch “yet another example of Russia’s attacks against Ukrainian cities.”
 


Putin hints at strikes on West in ‘global’ Ukraine war

Putin hints at strikes on West in ‘global’ Ukraine war
Updated 49 min 36 sec ago
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Putin hints at strikes on West in ‘global’ Ukraine war

Putin hints at strikes on West in ‘global’ Ukraine war
  • Warns of retaliation after Ukraine’s allies granting permission for Kyiv to use Western-supplied weapons to strike targets on Russian territory
  • Putin spoke after Russia test-fired a new generation intermediate-range missile at Ukraine, hinting that was capable of unleashing a nuclear payload
  • Washington saw no need to modify the United States’ own nuclear posture in response, says White House spokesperson

DNIPRO, Ukraine: Russian President Vladimir Putin said Thursday that the conflict in Ukraine had characteristics of a “global” war and did not rule out strikes on Western countries.
The Kremlin strongman spoke out after a day of frayed nerves, with Russia test-firing a new generation intermediate-range missile at Ukraine — which Putin hinted was capable of unleashing a nuclear payload.
Ukraine’s President Volodymyr Zelensky branded the strike a major ramping up of the “scale and brutality” of the war by a “crazy neighbor,” while Kyiv’s main backer the United States said that Russia was to blame for escalating the conflict “at every turn.”
Intermediate-range missiles typically have a reach of up to 5,500 kilometers (3,400 miles) — enough to make good on Putin’s threat of striking the West.
In a defiant address to the nation, Russia’s president railed at Ukraine’s allies granting permission for Kyiv to use Western-supplied weapons to strike targets on Russian territory, warning of retaliation.

 

In recent days Ukraine has fired US and UK-supplied missiles at Russian territory for the first time, escalating already sky-high tensions in the brutal nearly three-year-long conflict.
“We consider ourselves entitled to use our weapons against the military facilities of those countries that allow their weapons to be used against our facilities,” Putin said.
He said the US-sent Army Tactical Missile System (ATACMS) and British Storm Shadow payloads were shot down by Moscow’s air defenses, adding: “The goals that the enemy obviously set were not achieved.”
Kremlin spokesman Dmitri Peskov did, however, say Moscow informed Washington of the missile’s launch half an hour before it was fired through an automatic nuclear de-escalation hotline, in remarks cited in state media.
He earlier said Russia was doing everything to avoid an atomic conflict, having updated its nuclear doctrine this week.
White House spokeswoman Karine Jean-Pierre told reporters that Washington saw no need to modify the United States’ own nuclear posture in response.

Ukraine had earlier accused Russia of firing an intercontinental ballistic missile (ICBM) for the first time in history — a claim later downplayed by Washington.
The Ukrainian air force said Moscow had launched the missile as part of a barrage toward Dnipro, where local authorities said an infrastructure facility was hit and two civilians were wounded.
Putin said that Russia had carried out “testing in combat conditions of one of the newest Russian... missile systems” named “Oreshnik.”
Criticizing the global response to the strike — “final proof that Russia definitely does not want peace” — Zelensky warned that other countries could become targets for Putin too.
“It is necessary to urge Russia to a true peace, which is possible only through force,” the Ukrainian leader said in his evening address.
“Otherwise, there will be relentless Russian strikes, threats and destabilization, and not only against Ukraine.”
The attack on Dnipro comes just days after several foreign embassies shuttered temporarily in the Ukrainian capital, citing the threat of a large-scale strike.
“It is another example of reckless behavior from Russia,” a spokesman for British Prime Minister Keir Starmer told reporters.
The spokesman for UN Secretary-General Antonio Guterres, Stephane Dujarric, said the new missile’s deployment was “another concerning and worrying development,” warning the war was “going in the wrong direction.”
Yet a US official played down the threat, saying on condition of anonymity that Russia “likely possesses only a handful of these” experimental missiles.

The head of the Dnipropetrovsk region where the city of Dnipro is located said the Russian aerial bombardment damaged a rehabilitation center and several homes, as well as an industrial enterprise.
“Two people were wounded — a 57-year-old man was treated on the scene and a 42-year-old woman was hospitalized,” said the official, Sergiy Lysak.
Russia and Ukraine have escalated their use of long-range missiles in recent days since Washington gave Kyiv permission to use its ATACMS against military targets inside Russia — a long-standing Ukrainian request.
British media meanwhile reported on Wednesday that Kyiv had launched UK-supplied Storm Shadow missiles at targets in Russia after being given the green light from London.
With ranges of 300 and 250 kilometers respectively, both missile systems’ reach is far dwarfed by the experimental intermediate-range system fired by Russia.

Russia’s envoy to London on Thursday said that meant Britain was “now directly involved” in the Ukraine war, with Andrei Kelin telling Sky News “this firing cannot happen” without UK and NATO support.
But the White House’s Jean-Pierre countered that it was Russia who was behind the rising tensions, pointing to the reported deployment of thousands of North Korean troops to help Moscow fight off a Ukrainian offensive in Russia’s border Kursk region.
“The escalation at every turn is coming from Russia,” Jean-Pierre said, adding that the United States had warned Moscow against involving “another country in another part of the world” — referring to Pyongyang.


The defense ministry in Moscow said Thursday its air-defense systems had downed two Storm Shadows, without saying whether they had come down on Russian territory or in occupied Ukraine.

Air-launched long-range Storm Shadow/SCALP cruise missile, manufactured by MBDA, on displat at the 54th International Paris Air Show at Le Bourget Airport near Paris, France, on June 20, 2023. (REUTERS/File Photo)

The missile escalation is coming at a critical moment on the ground for Ukraine, as its defenses buckle under Russian pressure across the sprawling front line.
Russia claimed deeper advances in the war-battered Donetsk region, announcing on Thursday that its forces had captured another village close to Kurakhove, closing in on the town after months of steady advances.
Moscow’s defense ministry said Russian forces had taken the small village of Dalne, five kilometers (three miles) south of Kurakhove.
Lysak, the governor of the Dnipropetrovsk region, said that 26 people had been wounded in another strike on the town of Kryvyi Rig, where Zelensky was born.